mdsuite package

Subpackages

• mdsuite.calculators package
  • Submodules
    • mdsuite.calculators.angular_distribution_function module
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    • mdsuite.calculators.calculator module
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    • mdsuite.calculators.coordination_number_calculation module
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    • mdsuite.calculators.einstein_diffusion_coefficients module
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    • mdsuite.calculators.einstein_distinct_diffusion_coefficients module
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    • mdsuite.calculators.einstein_helfand_ionic_conductivity module
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    • mdsuite.calculators.einstein_helfand_thermal_conductivity module
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    • mdsuite.calculators.einstein_helfand_thermal_kinaci module
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    • mdsuite.calculators.green_kubo_distinct_diffusion_coefficients module
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    • mdsuite.calculators.green_kubo_ionic_conductivity module
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    • mdsuite.calculators.green_kubo_self_diffusion_coefficients module
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    • mdsuite.calculators.green_kubo_thermal_conductivity module
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    • mdsuite.calculators.green_kubo_viscosity module
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    • mdsuite.calculators.green_kubo_viscosity_flux module
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    • mdsuite.calculators.kirkwood_buff_integrals module
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    • mdsuite.calculators.nernst_einstein_ionic_conductivity module
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    • mdsuite.calculators.potential_of_mean_force module
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    • mdsuite.calculators.radial_distribution_function module
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    • mdsuite.calculators.spatial_distribution_function module
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    • mdsuite.calculators.structure_factor module
    • mdsuite.calculators.trajectory_calculator module
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    • mdsuite.calculators.transformations_reference module
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• mdsuite.data package
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• mdsuite.database package
  • Submodules
    • mdsuite.database.calculator_database module
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    • mdsuite.database.data_manager module
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    • mdsuite.database.database_base module
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    • mdsuite.database.experiment_database module
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    • mdsuite.database.mdsuite_properties module
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    • mdsuite.database.project_database module
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    • mdsuite.database.scheme module
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    • mdsuite.database.simulation_database module
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    • mdsuite.database.types module
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• mdsuite.experiment package
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    • mdsuite.experiment.experiment module
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    • mdsuite.experiment.run module
    • mdsuite.experiment.run_module module
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• mdsuite.file_io package
  • Submodules
    • mdsuite.file_io.chemfiles_read module
    • mdsuite.file_io.extxyz_files module
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    • mdsuite.file_io.file_read module
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    • mdsuite.file_io.lammps_flux_files module
    • mdsuite.file_io.lammps_trajectory_files module
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    • mdsuite.file_io.script_input module
    • mdsuite.file_io.tabular_text_files module
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• mdsuite.graph_modules package
  • Submodules
    • mdsuite.graph_modules.adjacency_matrix module
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    • mdsuite.graph_modules.molecular_graph module
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• mdsuite.memory_management package
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    • mdsuite.memory_management.memory_manager module
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• mdsuite.project package
  • Submodules
    • mdsuite.project.project module
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• mdsuite.time_series package
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    • mdsuite.time_series.base module
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    • mdsuite.time_series.energies module
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• mdsuite.transformations package
  • Submodules
    • mdsuite.transformations.integrated_heat_current module
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    • mdsuite.transformations.ionic_current module
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    • mdsuite.transformations.kinaci_integrated_heat_current module
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    • mdsuite.transformations.map_molecules module
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    • mdsuite.transformations.momentum_flux module
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    • mdsuite.transformations.scale_coordinates module
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    • mdsuite.transformations.test_trafos module
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    • mdsuite.transformations.thermal_flux module
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    • mdsuite.transformations.transformation_dict module
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    • mdsuite.transformations.transformations module
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    • mdsuite.transformations.translational_dipole_moment module
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    • mdsuite.transformations.unwrap_coordinates module
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    • mdsuite.transformations.unwrap_via_indices module
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    • mdsuite.transformations.velocity_from_positions module
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    • mdsuite.transformations.wrap_coordinates module
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• mdsuite.utils package
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    • mdsuite.utils.tensor_flow package
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    • mdsuite.utils.calculator_helper_methods module
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    • mdsuite.utils.config module
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    • mdsuite.utils.constants module
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    • mdsuite.utils.database module
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    • mdsuite.utils.exceptions module
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    • mdsuite.utils.helpers module
    • mdsuite.utils.linalg module
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    • mdsuite.utils.meta_functions module
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    • mdsuite.utils.molecule module
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    • mdsuite.utils.neighbour_list module
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    • mdsuite.utils.report_computer_characteristics module
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    • mdsuite.utils.scale_functions module
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    • mdsuite.utils.testing module
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    • mdsuite.utils.units module
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• mdsuite.visualizer package
  • Submodules
    • mdsuite.visualizer.d2_data_visualization module
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    • mdsuite.visualizer.d3_data_visualizer module
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    • mdsuite.visualizer.znvis_visualizer module
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Module contents